Bug-Database: https://github.com/marbl/canu/issues
Bug-Submit: https://github.com/marbl/canu/issues/new
Reference:
 # For 'standard' assemblies of PacBio or Nanopore reads
 - Author: >
    Sergey Koren and Brian P. Walenz and Konstantin Berlin and Jason
    R. Miller and Adam M. Phillippy
   Title: >
    Canu: scalable and accurate long-read assembly via adaptive k-mer weighting
    and repeat separation.
   Journal: Genome Res.
   Year: 2017
   DOI: 10.1101/gr.215087.116
   URL: https://doi.org/10.1101/gr.215087.116
 # Read and contig alignments during correction and consensus use
 - Author: >
     Martin Šošić and Mile Šikić
   Title: >
     Edlib: a C/C ++ library for fast, exact sequence alignment using edit
     distance
   Journal: Bioinformatics
   Year: 2017
   DOI: 10.1093/bioinformatics/btw753
   URL: https://doi.org/10.1093/bioinformatics/btw753
 # Overlaps are generated using
 - Author: >
     Konstantin Berlin and Sergey Koren and Chen-Shan Chin and James P Drake and
     Jane M Landolin and Adam M Phillippy
   Title: >
     Assembling large genomes with single-molecule sequencing and
     locality-sensitive hashing
   Journal: Nat Biotechnol.
   Year: 2015
   DOI: 10.1038/nbt.3238
   URL: https://doi.org/10.1038/nbt.3238
 - Author: >
     Eugene W. Myers and Granger G. Sutton and Art L. Delcher and Ian M. Dew and
     Dan P. Fasulo and Michael J. Flanigan and Saul A. Kravitz and
     Clark M. Mobarry and Knut H. J. Reinert and Karin A. Remington and
     Eric L. Anson and Randall A. Bolanos and Hui-Hsien Chou and
     Catherine M. Jordan and Aaron L. Halpern and Stefano Lonardi and
     Ellen M. Beasley and Rhonda C. Brandon and Lin Chen and Patrick J. Dunn and
     Zhongwu Lai and Yong Liang and Deborah R. Nusskern and Ming Zhan and
     Qing Zhang and Xiangqun Zheng and Gerald M. Rubin and Mark D. Adams
     and J. Craig Venter
   Title: A Whole-Genome Assembly of Drosophila
   Journal: Science
   Year: 2000
   DOI: 10.1126/science.287.5461.2196
   URL: https://doi.org/10.1126/science.287.5461.2196
 # Corrected read consensus sequences are generated using an algorithm derived from FALCON-sense
 - Author: >
     Chen-Shan Chin and Paul Peluso and Fritz J Sedlazeck and Maria Nattestad
     and Gregory T Concepcion and Alicia Clum and Christopher Dunn and
     Ronan O'Malley and Rosa Figueroa-Balderas and Abraham Morales-Cruz and
     Grant R Cramer and Massimo Delledonne and Chongyuan Luo and Joseph R Ecker
     and Dario Cantu and David R Rank and Michael C Schatz
   Title: >
     Phased diploid genome assembly with single-molecule real-time sequencing
   Journal: Nat Methods
   Year: 2016
   DOI: 10.1038/nmeth.4035
   URL: https://doi.org/10.1038/nmeth.4035
 # Contig consensus sequences are generated using an algorithm derived from pbdagcon
 - Author: >
     Chen-Shan Chin and David H Alexander and Patrick Marks and Aaron A Klammer
     and James Drake and Cheryl Heiner and Alicia Clum and Alex Copeland and
     John Huddleston and Evan E Eichler and Stephen W Turner and Jonas Korlach
   Title: >
     Nonhybrid, finished microbial genome assemblies from long-read SMRT
     sequencing data
   Journal: Nat Methods
   Year: 2013
   DOI: 10.1038/nmeth.2474
   URL: https://doi.org/10.1038/nmeth.2474
Registry:
 - Name: OMICtools
   Entry: OMICS_14592
 - Name: SciCrunch
   Entry: SCR_015880
 - Name: bio.tools
   Entry: CANU
 - Name: conda:bioconda
   Entry: canu
Repository: https://github.com/marbl/canu.git
Repository-Browse: https://github.com/marbl/canu
