Metadata-Version: 1.1
Name: changeo
Version: 1.2.0
Summary: A bioinformatics toolkit for processing high-throughput lymphocyte receptor sequencing data.
Home-page: http://changeo.readthedocs.io
Author: Namita Gupta, Jason Anthony Vander Heiden
Author-email: immcantation@googlegroups.com
License: GNU Affero General Public License 3 (AGPL-3)
Download-URL: https://bitbucket.org/kleinstein/changeo/downloads
Description: .. image:: https://img.shields.io/pypi/dm/changeo
            :target: https://pypi.org/project/changeo
        .. image:: https://img.shields.io/static/v1?label=AIRR-C%20sw-tools%20v1&message=compliant&color=008AFF&labelColor=000000&style=plastic
            :target: https://docs.airr-community.org/en/stable/swtools/airr_swtools_standard.html
        
        Change-O - Repertoire clonal assignment toolkit
        ================================================================================
        
        Change-O is a collection of tools for processing the output of V(D)J alignment
        tools, assigning clonal clusters to immunoglobulin (Ig) sequences, and
        reconstructing germline sequences.
         
        Dramatic improvements in high-throughput sequencing technologies now enable 
        large-scale characterization of Ig repertoires, defined as the collection of
        trans-membrane antigen-receptor proteins located on the surface of B cells and
        T cells. Change-O is a suite of utilities to facilitate advanced analysis of
        Ig and TCR sequences following germline segment assignment. Change-O
        handles output from IMGT/HighV-QUEST and IgBLAST, and provides a wide variety of
        clustering methods for assigning clonal groups to Ig sequences. Record sorting, 
        grouping, and various database manipulation operations are also included.
        
Keywords: bioinformatics,sequencing,immunology,adaptive immunity,immunoglobulin,AIRR-seq,Rep-Seq,B cell repertoire analysis,adaptive immune receptor repertoires
Platform: UNKNOWN
Classifier: Development Status :: 4 - Beta
Classifier: Environment :: Console
Classifier: Intended Audience :: Science/Research
Classifier: Natural Language :: English
Classifier: Operating System :: OS Independent
Classifier: Programming Language :: Python :: 3.4
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
