Bug-Database: https://github.com/ablab/spades/issues
Bug-Submit: https://github.com/ablab/spades/issues/new
Reference:
 - Author: >
    Anton Bankevich and Sergey Nurk and Dmitry Antipov and Alexey
    A. Gurevich and Mikhail Dvorkin and Alexander S. Kulikov and Valery
    M. Lesin and Sergey I. Nikolenko and Son Pham and Andrey D. Prjibelski
    and Alexey V. Pyshkin and Alexander V. Sirotkin and Nikolay Vyahhi
    and Glenn Tesler and Max A. Alekseyev and Pavel A. Pevzner
   Title: >
    SPAdes: A New Genome Assembly Algorithm and Its Applications to
    Single-Cell Sequencing
   Journal: Journal of Computational Biology
   Year: 2012
   Volume: 19
   Number: 5
   Pages: 455-477
   DOI: 10.1089/cmb.2012.0021
   PMID: 22506599
   URL: http://online.liebertpub.com/doi/abs/10.1089/cmb.2012.0021
   eprint: http://online.liebertpub.com/doi/pdfplus/10.1089/cmb.2012.0021
 - Author: >
    Sergey Nurk and Anton Bankevich and Dmitry Antipov and Alexey Gurevich
    and Anton Korobeynikov and Alla Lapidus and Andrey Prjibelsky and
    Alexey Pyshkin and Alexander Sirotkin and Yakov Sirotkin and Ramunas
    Stepanauskas and Jeffrey McLean and Roger Lasken and Scott Clingenpeel
    and Tanja Woyke and Glenn Tesler and Max Alekseyev and Pavel Pevzner
   Title: Assembling Genomes and Mini-metagenomes from Highly Chimeric Reads
   Journal: Lecture Notes in Computer Science
   Year: 2013
   Volume: 7821
   Pages: 158-170
   DOI: 10.1007/978-3-642-37195-0_13
   URL: http://link.springer.com/chapter/10.1007%2F978-3-642-37195-0_13
 - Author: >
    Prjibelski, Andrey D. and Vasilinetc, Irina and Bankevich, Anton and
    Gurevich, Alexey and Krivosheeva, Tatiana and Nurk, Sergey and
    Pham, Son and Korobeynikov, Anton and Lapidus, Alla and Pevzner, Pavel A.
   Title: >
    ExSPAnder: a universal repeat resolver for DNA fragment assembly
   Journal: Bioinformatics
   Volume: 30
   Number: 12
   Pages: i293-i301
   Year: 2014
   Month: 06
   ISSN: 1367-4803
   DOI: 10.1093/bioinformatics/btu266
   URL: https://doi.org/10.1093/bioinformatics/btu266
   eprint: "http://oup.prod.sis.lan/bioinformatics/article-pdf/
    30/12/i293/1089266/btu266.pdf"
 - Author: >
    Vasilinetc, Irina and Prjibelski, Andrey D. and Gurevich, Alexey and
    Korobeynikov, Anton and Pevzner, Pavel A.
   Title: >
    Assembling short reads from jumping libraries with large insert sizes
   Journal: Bioinformatics
   Volume: 31
   Number: 20
   Pages: 3262-3268
   Year: 2015
   Month: 06
   ISSN: 1367-4803
   DOI: 10.1093/bioinformatics/btv337
   URL: https://doi.org/10.1093/bioinformatics/btv337
   eprint: "http://oup.prod.sis.lan/bioinformatics/article-pdf/\
    31/20/3262/17087738/btv337.pdf"
 - Author: >
    Antipov, Dmitry and Hartwick, Nolan and Shen, Max and Raiko, Mikhail and
    Lapidus, Alla and Pevzner, Pavel A.
   Title: >
    plasmidSPAdes: assembling plasmids from whole genome sequencing data
   Journal: Bioinformatics
   Volume: 32
   Number: 22
   Pages: 3380-3387
   Year: 2016
   Month: 07
   ISSN: 1367-4803
   DOI: 10.1093/bioinformatics/btw493
   URL: https://doi.org/10.1093/bioinformatics/btw493
   eprint: "http://oup.prod.sis.lan/bioinformatics/article-pdf/\
    32/22/3380/16920848/btw493.pdf"
 - Author: >
    Nurk, Sergey and Meleshko, Dmitry and Korobeynikov, Anton and
    Pevzner, Pavel A.
   Title: >
    metaSPAdes: a new versatile metagenomic assembler
   Volume: 27
   Number: 5
   Pages: 824-834
   Year: 2017
   DOI: 10.1101/gr.213959.116
   URL: http://genome.cshlp.org/content/27/5/824.abstract
   eprint: http://genome.cshlp.org/content/27/5/824.full.pdf+html
   Journal: Genome Research
 - Author: >
    Bushmanova, Elena and Antipov, Dmitry and Lapidus, Alla and
    Prjibelski, Andrey D
   Title: >
    rnaSPAdes: a de novo transcriptome assembler and its application to
    RNA-Seq data
   Journal: GigaScience
   Volume: 8
   Number: 9
   Year: 2019
   Month: 09
   ISSN: 2047-217X
   DOI: 10.1093/gigascience/giz100
   URL: https://doi.org/10.1093/gigascience/giz100
   eprint: "http://oup.prod.sis.lan/gigascience/article-pdf/\
    8/9/giz100/29533229/giz100.pdf"
 - Author: >
    Meleshko, Dmitry and Mohimani, Hosein and Traccana, Vittorio and
    Hajirasouliha, Iman and Medema, Marnix H and Korobeynikov, Anton and
    Pevzner, Pavel A
   Title: >
    BiosyntheticSPAdes: Reconstructing Biosynthetic Gene Clusters From
    Assembly Graphs
   Year: 2019
   DOI: 10.1101/gr.243477.118
   URL: >
    http://genome.cshlp.org/content/early/2019/06/03/gr.243477.118.abstract
   eprint: "http://genome.cshlp.org/content/early/\
    2019/06/03/gr.243477.118.full.pdf+html"
   Journal: Genome Research
Registry:
 - Name: SciCrunch
   Entry: SCR_000131
 - Name: conda:bioconda
   Entry: spades
 - Name: OMICtools
   Entry: OMICS_01502
 - Name: bio.tools
   Entry: spades
Repository: https://github.com/ablab/spades.git
Repository-Browse: https://github.com/ablab/spades
